a) copy all data - which could be several GB
b) select individual files, of which there were often loads.
I just stumbled across a small application called Unison though, and it's pretty easy to install and configure.
Potentially using this method, you could even sync securely over the web, as it uses SSH :)
First install OpenSSH server
>sudo apt-get install openssh-server
Then install unison :
> sudo apt-get install unison unison-gtk
You then need to modify the profile (you can either set up a new one or modify the default) in ~/.unison
>sudo pico default.prf
Under the profile, you should have the local root path, remote (SSH) root path, and then any paths that you want to include, followed by any paths to exclude:
# Unison preferences file
root = /home/roachy/
root = ssh://roachy@10.204.4.35/
path = work/
path = Music/ignore = Path work/archive/*
Save the file and either run the GUI version
>unison-gtk
or the command line version
>unison
:)

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